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Available online 7 August 2026

Landscape configuration outweighs composition in shaping the diversity of phytophagous scarab beetles in the Serranía del Perijá, Colombia

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Sandy García-Atenciaa,*
Corresponding author
, María Argenis Bonillab, Yamileth Domínguez-Haydarc, Claudia E. Morenod
a Grupo Biodiversidad del Caribe Colombiano, Facultad de Ciencias Básicas, Universidad del Atlántico, Cra 30 # 8-49 Puerto Colombia, Colombia
b Grupo de Investigación Biología de Organismos Neotropicales – BIOTUN, Facultad de Ciencias, Departamento de Biología, Universidad Nacional de Colombia, Bogotá, Colombia
c Facultad de Ciencias Básicas, Universidad del Atlántico, Cra 30 # 8-49 Puerto Colombia, Colombia
d Centro de Investigaciones Biológicas, Instituto de Ciencias Básicas e Ingeniería, Universidad Autónoma del Estado de Hidalgo, Carretera Pachuca-Tulancingo 4.5 Col. Carboneras, C.P. 42184, Mineral de la Reforma, Hgo., Mexico
Highlights

  • Landscape configuration outweighed composition in shaping phytophagous scarab beetle diversity

  • Regeneration areas showed lower functional evenness than other land-cover types.

  • Taxonomic beta diversity was dominated by species turnover.

  • Functional beta diversity was mainly driven by nestedness.

  • Altitude and fragment isolation shaped richness across landscape contexts.

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Abstract

Landscape transformation alters species diversity and the functional structure of communities. In the Serranía del Perijá, northern Colombia, we assessed how landscape composition and configuration influence taxonomic and functional diversity (alpha and beta) of phytophagous scarab beetles (Scarabaeidae) across forests, crops, and regenerating areas within four landscape windows. A total of 3,713 individuals representing 50 species were collected using baited and light traps. Regionally, taxonomic alpha diversity metrics (°D, 1D, 2D), functional richness (FRicSES), and functional dispersion (FDisSES) did not differ significantly among land-cover types, although local contrasts were evident. Functional evenness (FEveSES) was lower in regeneration, and several species were unique to forests and regeneration but absent from crops. Generalized additive mixed models identified significant relationships between landscape variables and taxonomic richness, whereas patch shape, canopy-cover dissimilarity, and PLAND were associated with beta-diversity patterns among land-cover types. Taxonomic beta diversity was mainly driven by species turnover, whereas functional beta diversity was dominated by nestedness, suggesting reduced functional differentiation among communities. These findings highlight the importance of landscape configuration and connectivity in maintaining diversity in transformed tropical systems.

Keywords:
Functional traits
Coleoptera
Beta diversity
Habitat fragmentation
Ecological connectivity
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Introduction

Human activities increasingly transform ecosystems, altering landscape heterogeneity and directly affecting biodiversity (Fahrig, 2019; Arroyo-Rodríguez et al., 2020). Landscape heterogeneity is defined by composition (types and proportions of land-cover) and configuration (spatial arrangement, size, shape, and connectivity of patches), factors that determine species persistence and ecosystem functions (Fahrig, 2020). Fragmentation reduces landscape connectivity, potentially limiting dispersal among habitat patches and influencing community composition.

Biodiversity can be assessed from taxonomic and functional perspectives. Functional diversity is based on species traits that both influence how organisms respond to environmental conditions (response traits) and contribute to ecosystem functioning (effect traits) (Violle et al., 2007; de Bello et al., 2021). By linking species attributes to environmental filters, functional diversity complements taxonomic diversity and provides insights into how communities respond to changes in landscape structure (Mayfield et al., 2010).

Landscape effects on beetle diversity are well documented in several functional groups. In dung beetles and carabids, landscape heterogeneity affects functional diversity more strongly than taxonomic diversity (Ortega-Martínez et al., 2020), and fragmentation reduces functional evenness by favoring small or disturbance-tolerant species (Beiroz et al., 2018; Deppe and Fischer, 2023). In contrast, phytophagous scarab beetles (Scarabaeidae: Melolonthinae, Dynastinae, Rutelinae, Cetoniinae) remain understudied despite their key roles in organic matter degradation, pollination, and biological control (Morón et al., 1997). Moreover, some species are recognized as agricultural pests whose abundance increases in simplified landscapes (García-Atencia and Amat-García, 2021), underscoring the need to understand their community dynamics in transformed systems.

In the Serranía del Perijá (northeastern Colombia), agricultural expansion, conservation initiatives linked to high-demand crops such as coffee, and land-use shifts in post-conflict areas have created a heterogeneous mountain landscape composed of forests, crops, and secondary vegetation (Marquez-Peña and Domínguez-Haydar, 2023). Despite these pressures, forests still represent ∼30% of the landscape, resulting in a mosaic of medium-to-high modification (McIntyre and Hobbs, 1999). This environmental heterogeneity provides an ideal setting to evaluate how landscape composition and configuration influence both taxonomic and functional diversity across spatial scales.

To address these issues, we sampled phytophagous scarab beetles across different land-cover types within heterogeneous landscape windows and evaluated diversity responses to landscape composition and configuration. This study addresses two questions: (1) How do taxonomic and functional diversity of phytophagous scarab beetles vary at local and regional scales? and (2) Which landscape composition and configuration variables drive these patterns? We hypothesize that both landscape composition and configuration determine taxonomic and functional diversity in the Serranía del Perijá. Based on the greater structural complexity and resource availability of forest habitats, we expect higher alpha diversity in forests and more connected land-cover types than in more disturbed habitats. Our study provides a basis for conservation and sustainable management by identifying landscape attributes that sustain biodiversity and ecosystem resilience.

Materials and methodsStudy area

The study was conducted in the Serranía del Perijá, Cesar department, Colombia, in two villages of La Victoria district (La Jagua de Ibirico; 9°33′40″N, 73°20′11″W) and two villages of Estados Unidos district (Becerril; 9°42′11″N, 73°16′39″W) (Fig. 1). Sites ranged from 800 to 1500 m a. s. l., with vegetation typical of transitional zones between tropical dry and sub-humid forests. Mean annual temperature is 24 °C, with 1000–2000 mm of rainfall. The climate has two rainy seasons: moderate (April–June) and intense (September–November) (Rangel et al., 2019).

Fig. 1.

Study area in the Serranía del Perijá, northern Colombia. The four sampling windows are shown (W1–W2 in La Jagua de Ibirico; W3–W4 in Becerril, black polygons), along with sampling points in forest (green), regeneration (blue), and crops (red).

Landscape characterization

To represent the regional variation of the Serranía del Perijá and locate the sampling sites, four windows (W1–W4) of approximately 4 km² each were delineated, separated on average by 1.5 km (Fig. 1). A high-resolution GeoEye-1 satellite image (spatial resolution: 50 cm; spectral: 4 bands—Blue, Green, Red, NIR1) was used to identify land-cover composition and configuration in each landscape window. Land-cover classes were visually interpreted and manually digitized following CORINE classification criteria (IDEAM, 2010). From the original classification, three categories were grouped for sampling: (1) Forest (For) –only the forest category; (2) Crops (Cro) – temporary crops, permanent crops, and heterogeneous agricultural areas; and (3) Regeneration (Reg) – secondary vegetation dominated by herbaceous and shrub species. The area of each land-cover type is presented in the supplementary material (Table S1).

Landscape composition was assessed using the percentage of area (PLAND), which indicates the proportion of the landscape occupied by each cover class. Configuration metrics included Shape index (Shape), which quantifies patch shape complexity relative to a standard shape of the same area, and nearest-neighbor distance (DistE), which measures the degree of isolation among patches of the same class. All landscape metrics were calculated as class-level metrics within each landscape window using the landscapemetrics package (Hesselbarth et al., 2019) to characterize the composition and configuration of the dominant land-cover types across the heterogeneous mountain mosaic. Additionally, at each sampling point we recorded canopy cover (CanCov) using a spherical densitometer and altitude (Alt, m a. s. l.) with a GPS to characterize local conditions.

Scarab beetle sampling

In each window, 12 sampling points were established (four per land-cover type), totaling 48 points (Fig. 1). Points were distributed to represent the dominant land-cover types and ensure accessibility for repeated sampling. Three sampling campaigns were conducted between March 2021 and May 2022.

At each point, we set up a transect with four baited traps, spaced 50 m apart, and one funnel-type light trap. The baited traps consisted of 1 L containers filled with decomposing fruits (Musa paradisiaca L., Carica papaya L., Mangifera indica L.) mixed with beer (attractant), suspended 2−5 m above ground and active for three days. Light traps were automated with photocells and powered by solar panels, operating for two nights.

Collected specimens were preserved in 95% ethanol, counted, and identified to species level when possible, or otherwise to genus. Identifications were verified by Jhon César Neita (Instituto Alexander von Humboldt). Voucher specimens were deposited in the entomological collections of the Instituto Alexander von Humboldt and Universidad del Atlántico (UARC).

Statistical analysis

Analyses were conducted at two spatial scales. At the local scale, diversity was estimated within each landscape window using the four sampling points per land-cover type to characterize spatial variation among landscape units. At the regional scale, analyses were based on pooled assemblages combining all windows within each land-cover category. Thus, regional estimates represent landscape-scale patterns rather than comparisons among independent geographic regions. All analyses were performed in R v.4.3.1 (R Core Team, 2023). Sampling representativeness was assessed using sample coverage (Ĉn) with the iNEXT package (Hsieh et al., 2022), which estimates the proportion of species recorded relative to the total expected (Chao et al., 2014).

Taxonomic diversity

Alpha taxonomic diversity was estimated using Hill numbers expressed as effective species: °D (richness), 1D (diversity of common species), and 2D (diversity of dominant species) (Jost, 2006), calculated with iNEXT. Hill numbers were compared among land-cover types at both scales. At the local scale, comparisons were performed within each landscape window, whereas regional comparisons were based on pooled assemblages across all landscape windows. Differences were assessed with Kruskal–Wallis tests, followed by Mann–Whitney comparisons.

Beta diversity was calculated among land-cover types at both spatial scales using Sørensen’s index, partitioned into turnover (βtur) and nestedness (βnes) components (Baselga, 2010), using the betapart package (Baselga et al., 2023).

Functional diversity

At least three individuals per species and land-cover type were selected to measure six functional traits: eye diameter (ED), hind leg–body length ratio (LeBoRat), biomass (BIO), wing aspect ratio (WiHeRat), trophic group (TrGr), and wing loading (WL) (see values in Table S2). These traits were selected because they are associated with resource use, dispersal capacity and habitat use in phytophagous Scarabaeidae beetles (García-Atencia et al., 2024). Functional richness (FRic), evenness (FEve), and dispersion (FDis) were calculated (Villéger et al., 2008; Laliberté and Legendre, 2010) using the “FD” package. To control for richness-related biases, standardized effect sizes (SES) were computed using null models (Mouchet et al., 2010; Swenson, 2014). Differences were tested with Kruskal–Wallis + Dunn (FRicSES) and ANOVAs + Tukey (FEveSES, FDisSES).

Functional beta diversity was calculated among land-cover types at both spatial scales using Sørensen’s index and its partition into turnover and nestedness components (Villéger et al., 2013). In this case, turnover reflects the replacement of trait composition among assemblages, whereas nestedness indicates that communities differ mainly by containing subsets of the functional trait space present in richer assemblages. A Gower distance matrix was constructed from the functional traits, followed by a principal component analysis (PCA) to reduce trait dimensionality while preserving the main variation in trait composition. The first three axes, summarizing the main variation in functional traits, were retained as synthetic traits to construct the multidimensional functional space and calculate functional diversity indices (Villéger et al., 2011). Functional space was estimated using convex hulls, and all calculations were performed with the betapart package.

Landscape predictors and statistical models

To identify which landscape composition and configuration variables were associated with taxonomic and functional diversity patterns across land-cover types, landscape variables (PLAND, Shape, DistE, CanCov, and Alt) were summarized with PCA. Axis 1 was mainly associated with landscape composition and patch shape, whereas Axes 2 and 3 were primarily related to altitude and patch isolation metrics (see contributions in Table S4). The retained PCA axes were subsequently used as predictors in Generalized Additive Mixed Models (GAMMs) (Wood, 2017). Alpha diversity metrics (°D, 1D, 2D, FRicSES, FEveSES, FDisSES) were modeled as a function of these axes, with land-cover type as a fixed factor and window as a random effect. A Poisson distribution was assumed for °D and Gaussian for the other metrics. Preliminary model evaluation indicated no evidence of overdispersion, supporting the use of the Poisson error distribution.

The relationship between environmental dissimilarity and beta diversity (taxonomic and functional) was assessed using GAMMs relating Sørensen dissimilarity matrices to Euclidean distance matrices calculated from the original environmental variables, using a beta regression family (“betar”) appropriate for proportional response variables bounded between 0 and 1.

Results

A total of 3,713 individuals representing 50 species were collected, distributed among the subfamilies Melolonthinae, Dynastinae, Rutelinae, and Cetoniinae. At the regional scale, considering pooled assemblages across all landscape windows within each land-cover type, forest showed the highest accumulated richness (S) and abundance (N), (S = 38; N = 1,406), followed by crops (S = 36; N = 1,279) and regeneration areas (S = 35; N = 1,028) (Table S3). Locally (within each window), species richness ranged from 10 to 25 and abundance from 100 to 726 individuals. Sampling coverage (Ĉn) exceeded 90%, suggesting that the sampling design captured a substantial proportion of the detectable assemblage. Two species were unique to forests (e.g., Chlorota sp., Phyllophaga lissopyga), two to regeneration areas (Amithao lafertei, Hoplopyga liturata), and two to crops (Hemiphileurus sp., Phyllophaga impressipyga). In terms of abundance, Ceraspis innotata, Barybas sp., Astaena sp., Phyllophaga obsoleta, and Isonychus sp. dominated the assemblage, accounting for more than 70% of the individuals across the region.

Alpha taxonomic and functional diversity

At the regional scale, based on pooled assemblages across all landscape windows, taxonomic alpha diversity did not differ significantly among land-cover types (p > 0.05). At the local scale, species richness (0D) varied among land-cover types in some landscape windows, but not consistently. In these cases, values of 1D and 2D tended to decrease, indicating that assemblages were dominated by a few abundant species (Fig. 2).

Fig. 2.

Taxonomic and functional diversity of phytophagous scarab beetles across different land-cover types. (Top) Taxonomic alpha diversity expressed as effective numbers of species for Hill numbers 0D, 1D, and 2D in the four landscape windows (W1–W4), each considered a distinct landscape unit, and at the regional scale, represented by pooled assemblages across all windows within each land-cover type. (Middle) Standardized effect size (SES) values of functional diversity (FRic), functional evenness (FEve), and functional dispersion (FDis); red dashed lines indicate the expected range from –1.96 to 1.96. (Bottom) Taxonomic and functional beta diversity among land-cover types (Cro = crops, For = forest, Reg = regeneration), partitioned into turnover (βturn, blue) and nestedness (βnes, red). Points and error bars represent means and standard errors.

Functional evenness (FEveSES) was significantly higher in crops than in forests (p < 0.05), while functional dispersion (FDisSES) did not show significant differences but tended to be higher in forests and regeneration. Standardized functional richness (FRicSES) did not vary among land-cover types (p > 0.05). At the local scale, FRicSES values fell below expected intervals in some forest and crop sites, while FEveSES in regeneration showed high variability among points (Fig. 2).

Taxonomic and functional beta diversity

Taxonomic beta diversity among land-cover types, based on pooled assemblages across all landscape windows, was below 20% and was dominated by species turnover (βtur). The highest local dissimilarity (55%) was observed between crops and regeneration in W1, followed by forest and regeneration in the same window, whereas the lowest (25%) corresponded to the forest–crop pair in W2. In this latter window, nestedness explained a considerable fraction of dissimilarity, indicating that regeneration represented a subset of the other land-cover types. Turnover predominated in the remaining comparisons (Fig. 2).

Functional beta diversity was entirely driven by nestedness. High local dissimilarity occurred between forest and regeneration in most windows, and between forest and crops in one of them (Fig. 2). This suggests that communities share dominant functional traits but lose attributes in less diverse habitats.

Landscape drivers of diversity

The PCA showed that Axis1 (42.6% of variance) was associated with canopy cover, percentage of area, and patch shape; Axis2 (23.8%) with altitude and distance between fragments; and Axis3 (15.4%) with altitude and shape (Table S4).

GAMMs indicated that altitude and distance between fragments (Axis2) influenced species richness (0D) across all three land-cover types (Table S5, Fig. 3). In forests, richness increased at lower altitudes and shorter distances; in crops, it showed a nonlinear relationship with both variables; and in regeneration, richness was higher at intermediate altitudes and in more irregular patches. The 1D and 2D metrics showed similar trends, with increases in crops and decreases in forests at higher altitudes.

Fig. 3.

Relationship between diversity metrics and landscape variables. (A–B) PCA biplots for axes 1–2 and 2–3, showing the contribution of landscape composition and configuration variables (PLAND, CanCov, Shape, Alt, DistE) (see contributions in Table S4). Points represent sampling sites in forest (For), crops (Cro), and regeneration (Reg) across the four windows (W1–W4). (C–N) Results of significant GAMMs (p < 0.1), where the y-axis corresponds to the smoothed function estimated for each taxonomic (0D, 1D, 2D) and functional (FRicSES, FEveSES, FDisSES) diversity metric across the three land-cover types. Detailed results by spatial scale are shown in Table S5.

Regarding functional diversity, FRicSES in crops was negatively related to altitude and distance between fragments, whereas FEveSES was lower at higher altitudes and in more regular patches. FDisSES increased in forests with altitude and in regeneration with more irregular patch shapes (Fig. 3, Table S5).

Fig. 3. Relationship between diversity metrics and landscape variables. (A–B) PCA biplots for axes 1–2 and 2–3, showing the contribution of landscape composition and configuration variables (PLAND, CanCov, Shape, Alt, DistE) (see contributions in Table S4). Points represent sampling sites in forest (For), crops (Cro), and regeneration (Reg) across the four windows (W1–W4). (C–N) Results of significant GAMMs (p < 0.1), where the y-axis corresponds to the smoothed function estimated for each taxonomic (0D, 1D, 2D) and functional (FRicSES, FEveSES, FDisSES) diversity metric across the three land-cover types. Detailed results by spatial scale are shown in Table S5.

Beta-diversity patterns were evaluated using environmental dissimilarity matrices. Taxonomic beta diversity was mainly associated with altitudinal dissimilarity, patch shape, and fragment isolation, whereas taxonomic turnover (βtur) was primarily related to altitude (Fig. 4A, Table S6). Functional beta diversity was strongly associated with PLAND, canopy-cover, altitude, and fragment isolation (Fig. 4B, Table S6). Functional beta diversity was predominantly driven by nestedness, whereas turnover values remained consistently low across comparisons.

Fig. 4.

GAMM responses of beta diversity to landscape dissimilarity variables. (A) Taxonomic turnover vs. altitudinal dissimilarity. (B) Functional beta total vs. PLAND dissimilarity. Solid lines represent fitted smooth functions and dashed lines 95% confidence intervals.

Discussion

This study demonstrates that landscape structure shapes the taxonomic and functional diversity of phytophagous beetles in a heterogeneous region. Our findings emphasize the complementary roles of composition and configuration in determining diversity patterns at multiple scales, offering insights for managing fragmented landscapes.

Fauna of phytophagous scarab beetles in the region

Communities were dominated by Melolonthinae, a group widely associated with disturbed and heterogeneous tropical landscapes (García-Atencia and Amat-García, 2021). This dominance at the landscape scale has been rarely reported and suggests that landscape structure favors species with rhizophagous and saprophagous feeding habits. We also recorded rare and poorly known species in Colombia, restricted to forests and regenerating vegetation, underscoring the value of these habitats for conserving low-abundance and narrowly distributed taxa (Mouillot et al., 2013).

The landscape as determinant of taxonomic and functional diversity

Altitude and fragment isolation were significant predictors of both taxonomic and functional diversity. Higher diversity at higher elevations may reflect environmental conditions that favor Melolonthinae, as previously reported in Colombian mountain agroecosystems (Pardo-Locarno et al., 2005). The positive effect of fragment isolation suggests that greater distances among patches contribute to community differentiation by limiting dispersal and reducing landscape connectivity (Fahrig, 2003).

Patch shape also influenced diversity. Small and irregular patches may intensify edge effects (Murcia, 1995; Riva and Fahrig, 2022), particularly in regenerating vegetation. These findings are consistent with studies showing that habitat loss has a stronger influence than landscape configuration on scarab beetle richness (Sánchez-de-Jesús et al., 2016; Rivera et al., 2021).

Beta diversity patterns

Turnover was the main component of taxonomic beta diversity, particularly along altitudinal gradients, suggesting that environmental filtering may promote species differentiation among land-cover types, together with dispersal limitation in fragmented landscapes (Rivera et al., 2021; Marquez-Peña and Domínguez-Haydar, 2023). At local scales, this high turnover among land-cover types indicates that forest, regeneration and crop assemblages differ in species composition, possibly due to variation in vegetation structure and resource availability. At regional scales, the increase in nestedness suggests compositional simplification and species loss with disturbance. Similar patterns have been associated with habitat fragmentation and environmental filtering in scarab beetles from other Neotropical landscapes (Rivera et al., 2021). However, additional studies evaluating dispersal and resource use across landscape gradients would help clarify the relative contribution of these mechanisms.

Functional beta diversity was dominated by nestedness, suggesting reduced functional differentiation among communities. This pattern may reflect functional homogenization associated with the persistence of generalist species and the reduction of specialists linked to more complex vegetation structures (Rivera et al., 2021). Consequently, ecological functions associated with phytophagous scarab beetles could become simplified under disturbance, potentially reducing ecosystem resilience and functional complementarity (Anderson et al., 2011). These results highlight the importance of incorporating a functional perspective into studies of phytophagous scarab beetles, as changes in functional structure may not be detected through species richness alone.

Implications for conservation and landscape management

Our results highlight the importance of maintaining structural and functional connectivity in fragmented landscapes. Patch distance and shape are crucial factors to consider in management plans, prioritizing the preservation of small patches that contribute disproportionately to biodiversity (Arroyo-Rodríguez et al., 2020; Riva and Fahrig, 2022). Ecological restoration strategies at the farm scale, such as conserving riparian forests, establishing live fences, and promoting low-intensity production matrices, can generate biological corridors that facilitate movement and reduce homogenization (Fahrig, 2002).

The predominance of functional nestedness further suggests reduced functional differentiation among communities under disturbance. Maintaining functionally diverse assemblages may help sustain ecological processes associated with phytophagous scarab beetles in agricultural systems (Morón et al., 1997) and reduce the risk of functional simplification across fragmented landscapes. Overall, our findings reinforce the importance of landscape configuration for maintaining both taxonomic and functional diversity in heterogeneous mountain landscapes.

CRediT authorship contribution statement

Sandy García-Atencia: Conceptualization, Methodology, Formal analysis, Investigation, Data curation, Visualization, Writing – original draft, Funding acquisition; María Argenis Bonilla: Conceptualization, Methodology, Writing – review & editing, Supervision; Yamileth Domínguez-Haydar: Conceptualization, Methodology, Investigation, Project administration, Supervision, Funding acquisition; Claudia E. Moreno: Formal analysis, Writing – review & editing, Supervision.

Funding

This work was supported by Ministerio de Ciencia, Tecnología e Innovación de Colombia- MINCIENCIAS [grant: Convocatoria 808–2018].

Data availability

The data that has been used is confidential.

Data will be made available on request.

Declaration of competing interest

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

Acknowledgments

We acknowledge the Ministerio de Ciencia, Tecnología e Innovación de Colombia (MINCIENCIAS) for supporting this research through the project “Evaluación de servicios ecosistémicos y su relación con perfiles socioeconómicos de las fincas incluidas en un programa de compensación forestal en la cuenca Tucuy, departamento del Cesar, Colombia,” funded under call 808–2018 Proyectos de Ciencia, Tecnología e Innovación y su contribución a los retos del país. MINCIENCIAS also provided partial funding for the doctoral training of the lead author at the Universidad Nacional de Colombia. We further thank the Universidad del Atlántico for providing laboratory facilities essential for the execution of this project. The contributions of technical and academic teams in field and laboratory activities were fundamental to the successful completion of this study. We also extend our sincere gratitude to Juan Zuloaga for his valuable support in the formal analysis and for his thoughtful comments and suggestions, which greatly improved this work.

Appendix A
Supplementary data

The following is Supplementary data to this article:

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